FruitBreeding - Rubus Genomics Markers - 3

Rubus genomics research - Markers


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Polymorphic SSR primer pairs developed from genomic DNA

Code Repeat motif Primers Allele sizes Latham Allele sizes Glen Moy
Rubus1b (ta)12-(ag)10 L: cctcttcaccgatttagacca
R: tttagccccagtccaaaagtt
212, 234 200, 229
Rubus2a (gt)12-g-(gt)8 L: tgagggaagaagaggcaaga
R: cacgtgtgaccccaatgata
175, 180 180, 188
Rubus4a (ct)14(ca)16 L: agcgaattgcatctctctctc
R: gcactgaaaaatcatgcatctg
143 139, 143
Rubus6a (ct)16(ca)32 L: tgcatgtgactttgcatctct
R: gcactgaaaaatcatgcatctg
139 139, 150
Rubus12a (ct)7(at)6(gt)10 L: attccccgcctcagaataat
R: aaggtttgtgacgggaacag
130, 150 141
Rubus16a (at)8(gt)11 L: tgttgtacgtgttgggcttt
R: gggtgtttgccagtttcagt
145, 155 145, 155
Rubusr19a (ta)5 L: gcagatcaatgaaagcccatt
R: cggatcctccaaccttcat
189, 199 201
Rubus20a (a)14 L: tgacataatgcatgaagggaaa
R: cactatggttggccacagg
139 150, 154
Rubus22a (at)16(gt)5 L: tgtggacgaccataacttgc
R: tcggcatttatacacacacaca
140, 150 150
Rubus24a (at)5 L: acacacgcacgtacagcact
R: gcgcagtcaagtggactttt
155, null 166
Rubus25a (gt)8 L: gccaaacacaccgttatcttg
R: cattaccacacgcttgatgc
144, 150 144
Rubus26a (ct)11(ca)29 L: aacaccggcttctaaggtct
R: gatcctggaaagcgatgaaa
122, 150 150
Rubusr35a (ct)8 L: ttggaagcacaaaagcgata
R: gcgacagccaaaacaaaagt
210, 226 226
Rubusr43a (ct)5 L: tgcctaaagtttgctgctga
R: tcgaatgtaactgcgagtgc
201, 209 201
Rubus45c (t)10-(a)11-(ga)15 L: gaggggcaattaaagggttt
R: tgttgtaatttggtttatccttgg
215, 245 228, null
Rubusr47a (ct)7-(ta)7 L: aagcaggacacctcagatgc
R: cagccaaccatcatcagcta
203, 244 203
Rubus49a (ta)7-(ga)7 L: cagccaaccatcatcagcta
R: ttgttttcaggaggcaggac
166, 182 166, 182
Rubusr56a (tg)12(ag)11 L: tggagattccaaataaacaaataccc
R: tgtgtaaaccgttggatgaa
212, 245 212
Rubus57a (ag)11 L: atgtgtgggggaagataacg
R: tgtccccaacatttcatacaaa
155 155, 185
Rubusr59b (ct)9 L: ctcctcctctttcctcgtca
R: aagtgctgctgatgtgttgc
279, 240 279
Rubusr76b (ct)5-(ct)4 L: ctcacccgaaatgttcaacc
R: ggctaggccgaatgactaca
250, 340 250, 340
Rubus98d (gaa)5-(ga)6 L: ggcttctcaatttgctgtgtc
R: tgatttgaaatcgtgcggtta
173, 178 178
Rubus102c (c )9(a)10 L: cccctcccctctctgtagat
R: tcatgtgcaaacccgtacac
95, 123 123
Rubus105b (ag)8 L: gaaaatgcaaggcgaattgt
R: tccatcaccaacaccaccta
158, 190 158, 164
Rubus107a (ag)8 L: gccagcaccaaaaacctaca
R: tttcaccgtcaagaagaaagc
155, 160 155
Rubus110a (tc)8 L: aaacaaaggataaagtgggaagg
R: tgtcagttggagggagaaca
180, 157 157
Rubus116a (ct)12-(t)10 L: ccaacccaaaaaccttcaac
R: gttgtggcatggccttttat
185, 190 193
Rubus117b (cata)6-(ga)8 L: ccaactgaaacctcatgcac
R: acttggtcctgttggtctgg
246, 286 240, 246
Rubus118b (ct)25 L: ccgcaaaacaaaaggtcaag
R: ggattcttgccaaagtcgaa
104, 112 137
Rubus119a (ga)8 L: gagcaaaacaaacacagatcaaa
R: ctccaagtagtcacgcagca
147, 150 147
Rubus123a (ag)8 L: cagcagctagcattttactgga
R: gcactctccacccatttcat
170, null 140, 150
Rubus124a (at)9 L: atgagcgcgaaatgtggtat
R: gtggaagttgttgtcgctca
150, 162 150
Rubus126b (ct)31(ca)22 L: cctgcatttttctgtattttgg
R: tcagttttcttcccacggtta
150, 164 164, 201
Rubus137a (tg)8-(ta)4 L: tgtgagcagagtgaaggagcta
R: agcattattcgcgcagtttt
179, 187 179
Rubus145a (gt)7 L: tgtcccagctttctggtttc
R: ggcatctgtgcggtaaaaat
131 139, 142
Rubus153a (gt)11 L: cccagcttcagttggaaaga
R: agaggctcatttgccttgaa
154, 156 156
Rubus160a (ct)7 L: tccaactcggattctccatc
R: tatgtgagctgggcatggt
155, 160 155
Rubus163a (ga)35 L: tgttgtcctctgcaaccatt
R: gcatagcccacaattagcaa
203 203, 207
Rubus166b (tc)15 L: ccgcaagggttgtatcctaa
R: gcatgagggcgatataaagg
215, 221 219, 224
Rubus167a (tc)9 L: aaccctaagccaaggaccat
R: caccacccatgacagtcaga
166, 182 164, 180
Rubus194h (ga)12 L: tgtgttgttctctgcaacca
R: agcccttacttttcctgcaa
100, 111 111, 115
Rubus210a (ct)25 L: tcctgatggttgtctggttg
R: ttcgaggcttttcagaaacaa
101, 115 101, 115
Rubus223a (at)4-(ta)8-(at)10 L: tctcttgcatgttgagattctatt
R: ttaaggcgtcgtggataagg
146, 151 138
Rubus228a (ga)41 L: tggacagctttgtgcagagt
R: gcttgcttgtatctccattgc
118, 128 150
Rubus233a (ct)11 L: tgctgctttgttattttgtgc
R: ggtcaacaatccttggataatca
190, 200 190
Rubus237b ((ttttc)3 L: catgcttgcatgatcaccac
R: tgagccataaatttagagggatt
134 136, 147
Rubus243a (ct)12 L: tgagcgagatgattggagtg
R: tatgtggtgatcatgcaagc
140 140, 174
Rubus251a (ga)10 L: gcatcagccattgaatttcc
R: cccacctccattaccaactc
157,183 157
Rubus252a (ta)7-(ag)7 L: cattggctacaggcaactca
R: ttggcacaagtggacagaag
128 128, 140
Rubus253a (ct)34(at)11 L: acctccaaatgccatagtgc
R: caagaatctgatctcgtcttagca
153, 165 153
Rubus256e (ctt)7(ct)8(at)10(ac)5 L: caacctgaaaaccaaactcg
R: ctgagagcctgagaggtggt
172, 211 141
Rubus257a (ct)4-(ct)6 L: ctcatcccaacaggtgtacg
R: gagactccatggcgagaaag
181, 185 158, 185
Rubus259f (ct)4-(ag)8 L: tggcacaagaagcctgtaac
R: tcccatatccctcagcattc
244, 252 247
Rubus260a (ga)13 L: ttcggaatttcggatcaaac
R: gagagatctgacttgccaacg
165, 173 147
Rubus262b (ag)15 L: tgcatgaaggcgatataaagg
R: tccgcaagggttgtatccta
217, 225 225
Rubus263f (at)16-(ca)4 L: attccgccctgcataaatc
R: ggaaattggaaaccattgga
241, 253 253
Rubus264b (ga)5-(gaaa)3(ga)7 L: tgcacagtttagggcaaaatc
R: atcaggctgcatttttacgc
175, 186 175, 186
Rubus268b (ga)10 L: ccaagacaatgacctgagca
R: ggacagggttccacagagtg
177, 183 183, 204
Rubus270a (ga)10 L: gcatcagccattgaatttcc
R: cccacctccattaccaactc
167, 185 158
Rubus275a (ag)27 L: cacaaccagtcccgagaaat
R: catttcatccaaatgcaacc
130 114, 145
Rubus277a (a)11(ag)8 L: gccccatcctgtacaaagaa
R: ttgcaacaaaggtacgtaatgg
234, 250 234
Rubus279a (ga)21 L: tcgacatggctagttctacacag
R: ccccaacttaaaccattctca
110, 132 120
Rubus280a (ag)13 L: ttcggaatttcggatcaaac
R: cgaccaaaaaggaactcagc
183, 191 165
Rubus285a (tc)9 L: tcgagaagcttgctatgctg
R: ggatacctcaatggctttcttg
167, null 138
Rubus289a (ct)12 L: ttgcaccctagcatgtagca
R: gaggtgaaaagggaacacga
139 139, 166
Rubus293b (tc)9 L: atggccaatgaacctaccag
R: tgttgatgtgttgccatattga
180 159, 192